IL_8K2D_076

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_076 not in the Motif Atlas

Homologous match to IL_8C3A_078

Geometric discrepancy: 0.1328

The information below is about IL_8C3A_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8K2D|1|C1|U|1702
8K2D|1|C1|U|1703
8K2D|1|C1|A|1704
8K2D|1|C1|U|1705
8K2D|1|C1|C|1706
8K2D|1|C1|A|1707
*
8K2D|1|C1|U|1737
8K2D|1|C1|C|1738
8K2D|1|C1|U|1739
8K2D|1|C1|U|1740
8K2D|1|C1|A|1741
8K2D|1|C1|U|1742
8K2D|1|C1|G|1743

Current chains

Chain C1

23S rRNA

Nearby chains

Chain Lg

Large ribosomal subunit protein eL34A