IL_8K2D_077
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 8K2D|1|C1|U|1716, 8K2D|1|C1|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_077 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1212
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8K2D|1|C1|C|1711
8K2D|1|C1|G|1712
8K2D|1|C1|G|1713
8K2D|1|C1|A|1714
8K2D|1|C1|A|1715
8K2D|1|C1|U|1716
8K2D|1|C1|U|1717
*
8K2D|1|C1|G|1727
8K2D|1|C1|G|1728
8K2D|1|C1|A|1729
8K2D|1|C1|G|1730
8K2D|1|C1|A|1731
8K2D|1|C1|U|1732
8K2D|1|C1|G|1733
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LR
- Large ribosomal subunit protein eL19A
- Chain LZ
- Large ribosomal subunit protein eL27A
- Chain Lc
- Large ribosomal subunit protein eL30
- Chain Lg
- Large ribosomal subunit protein eL34A
- Chain Lp
- Large ribosomal subunit protein eL43A
- Chain SN
- 40S ribosomal protein S13
Coloring options: