IL_8K2D_086

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8K2D|1|C1|U|2159, 8K2D|1|C1|U|2175, 8K2D|1|C1|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_086 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.0839

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8K2D|1|C1|C|2156
8K2D|1|C1|G|2157
8K2D|1|C1|A|2158
8K2D|1|C1|U|2159
8K2D|1|C1|G|2160
8K2D|1|C1|G|2161
*
8K2D|1|C1|U|2173
8K2D|1|C1|G|2174
8K2D|1|C1|U|2175
8K2D|1|C1|U|2176
8K2D|1|C1|G|2177
8K2D|1|C1|A|2178
8K2D|1|C1|C|2179
8K2D|1|C1|G|2180

Current chains

Chain C1

23S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain LA

Large ribosomal subunit protein uL2A

Chain Lp

Large ribosomal subunit protein eL43A