IL_8K2D_101
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAG*CGCCAGUGAAAUAC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_101 not in the Motif Atlas
- Geometric match to IL_1MZP_003
- Geometric discrepancy: 0.1528
- The information below is about IL_1MZP_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75283.2
- Basepair signature
- cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
- Number of instances in this motif group
- 3
Unit IDs
8K2D|1|C1|G|2466
8K2D|1|C1|G|2467
8K2D|1|C1|A|2468
8K2D|1|C1|G|2469
*
8K2D|1|C1|C|2476
8K2D|1|C1|G|2477
8K2D|1|C1|C|2478
8K2D|1|C1|C|2479
8K2D|1|C1|A|2480
8K2D|1|C1|G|2481
8K2D|1|C1|U|2482
8K2D|1|C1|G|2483
8K2D|1|C1|A|2484
8K2D|1|C1|A|2485
8K2D|1|C1|A|2486
8K2D|1|C1|U|2487
8K2D|1|C1|A|2488
8K2D|1|C1|C|2489
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain L1
- Large ribosomal subunit protein uL1A
Coloring options: