IL_8K2D_123
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAAUU*ACCA
- Length
- 9 nucleotides
- Bulged bases
- 8K2D|1|C1|C|3092
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_123 not in the Motif Atlas
- Homologous match to IL_8C3A_126
- Geometric discrepancy: 0.1259
- The information below is about IL_8C3A_126
- Detailed Annotation
- Major groove minor groove platform with tHH
- Broad Annotation
- Major groove minor groove platform with tHH
- Motif group
- IL_14592.1
- Basepair signature
- cWW-tHH-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
8K2D|1|C1|U|3047
8K2D|1|C1|A|3048
8K2D|1|C1|A|3049
8K2D|1|C1|U|3050
8K2D|1|C1|U|3051
*
8K2D|1|C1|A|3091
8K2D|1|C1|C|3092
8K2D|1|C1|C|3093
8K2D|1|C1|A|3094
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LV
- Large ribosomal subunit protein uL14A
- Chain LW
- Large ribosomal subunit protein eL24A
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