IL_8K2D_138
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUA*UUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 8K2D|1|C1|G|3377
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_138 not in the Motif Atlas
- Homologous match to IL_8C3A_138
- Geometric discrepancy: 0.0828
- The information below is about IL_8C3A_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84428.1
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8K2D|1|C1|G|3328
8K2D|1|C1|U|3329
8K2D|1|C1|A|3330
*
8K2D|1|C1|U|3373
8K2D|1|C1|U|3374
8K2D|1|C1|A|3375
8K2D|1|C1|A|3376
8K2D|1|C1|G|3377
8K2D|1|C1|C|3378
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LW
- Large ribosomal subunit protein eL24A
- Chain Ld
- Large ribosomal subunit protein eL31A
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