IL_8K2D_161
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 8K2D|1|C2|U|313, 8K2D|1|C2|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_161 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.0892
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8K2D|1|C2|U|311
8K2D|1|C2|A|312
8K2D|1|C2|U|313
8K2D|1|C2|C|314
8K2D|1|C2|A|315
8K2D|1|C2|A|316
*
8K2D|1|C2|U|348
8K2D|1|C2|U|349
8K2D|1|C2|U|350
8K2D|1|C2|C|351
8K2D|1|C2|A|352
8K2D|1|C2|A|353
8K2D|1|C2|C|354
8K2D|1|C2|G|355
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SI
- 40S ribosomal protein S8-A
- Chain SL
- Small ribosomal subunit protein uS17A
- Chain SX
- 40S ribosomal protein S23-A
Coloring options: