IL_8K2D_175
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8K2D|1|C2|A|579, 8K2D|1|C2|U|581, 8K2D|1|C2|U|582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_175 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.114
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8K2D|1|C2|G|562
8K2D|1|C2|U|563
8K2D|1|C2|G|564
8K2D|1|C2|C|565
8K2D|1|C2|C|566
8K2D|1|C2|A|567
8K2D|1|C2|G|568
*
8K2D|1|C2|C|575
8K2D|1|C2|G|576
8K2D|1|C2|G|577
8K2D|1|C2|U|578
8K2D|1|C2|A|579
8K2D|1|C2|A|580
8K2D|1|C2|U|581
8K2D|1|C2|U|582
8K2D|1|C2|C|583
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain CD
- Elongation factor 2
- Chain CS
- Suppressor protein STM1
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SX
- 40S ribosomal protein S23-A
- Chain Se
- 40S ribosomal protein S30-A
Coloring options: