IL_8K2D_199

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8K2D|1|C2|C|1158, 8K2D|1|C2|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_199 not in the Motif Atlas

Homologous match to IL_8C3A_449

Geometric discrepancy: 0.0993

The information below is about IL_8C3A_449

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.10

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

16

Unit IDs

8K2D|1|C2|A|1157
8K2D|1|C2|C|1158
8K2D|1|C2|C|1159
8K2D|1|C2|A|1160
*
8K2D|1|C2|U|1617
8K2D|1|C2|C|1618
8K2D|1|C2|C|1619
8K2D|1|C2|C|1620
8K2D|1|C2|U|1621

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SF

Small ribosomal subunit protein uS7

Chain SQ

Small ribosomal subunit protein uS9A

Chain Sc

Small ribosomal subunit protein eS28A