IL_8K2D_236
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAAGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_236 not in the Motif Atlas
- Homologous match to IL_8C3A_144
- Geometric discrepancy: 0.09
- The information below is about IL_8C3A_144
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_45841.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8K2D|1|C4|G|21
8K2D|1|C4|A|22
8K2D|1|C4|A|23
8K2D|1|C4|A|24
8K2D|1|C4|G|25
8K2D|1|C4|C|26
8K2D|1|C4|A|27
*
8K2D|1|C4|U|53
8K2D|1|C4|U|54
8K2D|1|C4|A|55
8K2D|1|C4|A|56
8K2D|1|C4|G|57
8K2D|1|C4|C|58
Current chains
- Chain C4
- 5S rRNA
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LJ
- Large ribosomal subunit protein uL5A
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