IL_8KIE_012

3D structure

PDB id

8KIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF with 50S ribosomal subunit (local map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8KIE_012 not in the Motif Atlas

Homologous match to IL_5J7L_347

Geometric discrepancy: 0.0832

The information below is about IL_5J7L_347

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

8KIE|1|a|U|2801
8KIE|1|a|C|2802
8KIE|1|a|A|2803
8KIE|1|a|C|2804
8KIE|1|a|U|2805
*
8KIE|1|a|A|2846
8KIE|1|a|A|2847
8KIE|1|a|A|2848

Current chains

Chain a

23S rRNA (partial)

Nearby chains

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19