IL_8KIE_013

3D structure

PDB id

8KIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF with 50S ribosomal subunit (local map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

8KIE|1|a|U|2810, 8KIE|1|a|U|2811

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8KIE_013 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0593

The information below is about IL_5J7L_348

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8KIE|1|a|U|2808
8KIE|1|a|G|2809
8KIE|1|a|U|2810
8KIE|1|a|U|2811
8KIE|1|a|C|2812
*
8KIE|1|a|G|2839
8KIE|1|a|G|2840
8KIE|1|a|U|2841
8KIE|1|a|A|2842
8KIE|1|a|G|2843

Current chains

Chain a

23S rRNA (partial)

Nearby chains

Chain o

50S ribosomal protein L19