IL_8OI5_067

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

8OI5|1|1|U|1816, 8OI5|1|1|U|1817

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_067 not in the Motif Atlas

Homologous match to IL_8C3A_071

Geometric discrepancy: 0.0577

The information below is about IL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

8OI5|1|1|G|1619
8OI5|1|1|G|1620
8OI5|1|1|A|1621
*
8OI5|1|1|U|1814
8OI5|1|1|U|1815
8OI5|1|1|U|1816
8OI5|1|1|U|1817
8OI5|1|1|C|1818

Current chains

Chain 1

25S

Nearby chains

Chain AH

60S ribosomal protein L34-B