IL_8OI5_204

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

8OI5|1|AS|G|1510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_204 not in the Motif Atlas

Homologous match to IL_8C3A_482

Geometric discrepancy: 0.0901

The information below is about IL_8C3A_482

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_04395.1

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

3

Unit IDs

8OI5|1|AS|U|1497
8OI5|1|AS|C|1498
8OI5|1|AS|A|1499
8OI5|1|AS|A|1500
8OI5|1|AS|C|1501
*
8OI5|1|AS|G|1509
8OI5|1|AS|G|1510
8OI5|1|AS|A|1511

Current chains

Chain AS

25S

Nearby chains

Chain BK

Ribosomal protein L22

Chain BM

60S ribosomal protein L19-A

Chain CG

60S ribosomal protein L39