IL_8OI5_257

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

8OI5|1|AS|A|3114, 8OI5|1|AS|C|3115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_257 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.0418

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8OI5|1|AS|C|2976
8OI5|1|AS|A|2977
8OI5|1|AS|A|2978
8OI5|1|AS|U|2979
*
8OI5|1|AS|A|3111
8OI5|1|AS|G|3112
8OI5|1|AS|A|3113
8OI5|1|AS|A|3114
8OI5|1|AS|C|3115
8OI5|1|AS|G|3116

Current chains

Chain AS

25S

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BJ

Ribosomal protein L13