IL_8OI5_299

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

8OI5|1|B|U|258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_299 not in the Motif Atlas

Homologous match to IL_8C3A_405

Geometric discrepancy: 0.1264

The information below is about IL_8C3A_405

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8OI5|1|B|G|202
8OI5|1|B|U|203
8OI5|1|B|A|204
*
8OI5|1|B|U|257
8OI5|1|B|U|258
8OI5|1|B|U|259
8OI5|1|B|U|260
8OI5|1|B|C|261

Current chains

Chain B

18S

Nearby chains

Chain G

40S ribosomal protein S4

Chain K

40S ribosomal protein S8