IL_8OI5_304

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

8OI5|1|B|U|311, 8OI5|1|B|C|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_304 not in the Motif Atlas

Homologous match to IL_8C3A_410

Geometric discrepancy: 0.0425

The information below is about IL_8C3A_410

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.1

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

8OI5|1|B|U|309
8OI5|1|B|A|310
8OI5|1|B|U|311
8OI5|1|B|C|312
8OI5|1|B|A|313
8OI5|1|B|A|314
*
8OI5|1|B|U|346
8OI5|1|B|U|347
8OI5|1|B|U|348
8OI5|1|B|C|349
8OI5|1|B|A|350
8OI5|1|B|A|351
8OI5|1|B|C|352
8OI5|1|B|G|353

Current chains

Chain B

18S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain K

40S ribosomal protein S8

Chain N

40S ribosomal protein S11A

Chain Z

Ribosomal protein S23 (S12)