IL_8OI5_425

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OI5_425 not in the Motif Atlas

Homologous match to IL_8C3A_446

Geometric discrepancy: 0.0492

The information below is about IL_8C3A_446

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41756.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8OI5|1|CM|G|1096
8OI5|1|CM|G|1097
8OI5|1|CM|A|1098
8OI5|1|CM|G|1099
8OI5|1|CM|U|1100
8OI5|1|CM|A|1101
8OI5|1|CM|U|1102
8OI5|1|CM|G|1103
*
8OI5|1|CM|U|1114
8OI5|1|CM|G|1115
8OI5|1|CM|A|1116
8OI5|1|CM|A|1117
8OI5|1|CM|A|1118
8OI5|1|CM|C|1119

Current chains

Chain CM

18S

Nearby chains

Chain CI

60S ribosomal protein L41

Chain DK

Ribosomal protein S23 (S12)