IL_8OI5_428
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 8OI5|1|CM|C|1143, 8OI5|1|CM|C|1144
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OI5_428 not in the Motif Atlas
- Homologous match to IL_8C3A_449
- Geometric discrepancy: 0.044
- The information below is about IL_8C3A_449
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.10
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 16
Unit IDs
8OI5|1|CM|A|1142
8OI5|1|CM|C|1143
8OI5|1|CM|C|1144
8OI5|1|CM|A|1145
*
8OI5|1|CM|U|1604
8OI5|1|CM|C|1605
8OI5|1|CM|C|1606
8OI5|1|CM|C|1607
8OI5|1|CM|U|1608
Current chains
- Chain CM
- 18S
Nearby chains
- Chain CS
- Ribosomal protein S7
- Chain DD
- 40S ribosomal protein S16
- Chain DH
- Ribosomal protein S10
- Chain DP
- 40S ribosomal protein S28-B
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