IL_8OIN_007
3D structure
- PDB id
- 8OIN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAUCAA*UCAUAACG
- Length
- 14 nucleotides
- Bulged bases
- 8OIN|1|AA|U|112, 8OIN|1|AA|U|138
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIN_007 not in the Motif Atlas
- Geometric match to IL_4LFB_011
- Geometric discrepancy: 0.1466
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8OIN|1|AA|U|110
8OIN|1|AA|A|111
8OIN|1|AA|U|112
8OIN|1|AA|C|113
8OIN|1|AA|A|114
8OIN|1|AA|A|115
*
8OIN|1|AA|U|135
8OIN|1|AA|C|136
8OIN|1|AA|A|137
8OIN|1|AA|U|138
8OIN|1|AA|A|139
8OIN|1|AA|A|140
8OIN|1|AA|C|141
8OIN|1|AA|G|142
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AD
- Aurora kinase A interacting protein 1
- Chain AJ
- Mitochondrial ribosomal protein S12
- Chain AL
- 28S ribosomal protein S15, mitochondrial
- Chain AN
- uS17m
- Chain Aj
- Mitochondrial ribosomal protein S34
Coloring options: