IL_8OIN_057

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8OIN|1|B8|G|348, 8OIN|1|B8|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIN_057 not in the Motif Atlas

Geometric match to IL_5TBW_028

Geometric discrepancy: 0.1613

The information below is about IL_5TBW_028

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8OIN|1|B8|G|242
8OIN|1|B8|A|243
8OIN|1|B8|A|244
8OIN|1|B8|A|245
8OIN|1|B8|C|246
*
8OIN|1|B8|G|346
8OIN|1|B8|U|347
8OIN|1|B8|G|348
8OIN|1|B8|A|349
8OIN|1|B8|U|350
8OIN|1|B8|A|351
8OIN|1|B8|G|352
8OIN|1|B8|C|353

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BN

Mitochondrial ribosomal protein L4

Chain BT

39S ribosomal protein L15, mitochondrial

Chain Bz

Mitochondrial ribosomal protein L51