IL_8OIN_120
3D structure
- PDB id
- 8OIN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AACCCC*GAGGGUU
- Length
- 13 nucleotides
- Bulged bases
- 8OIN|1|B8|A|976
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIN_120 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.2902
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8OIN|1|B8|A|818
8OIN|1|B8|A|819
8OIN|1|B8|C|820
8OIN|1|B8|C|821
8OIN|1|B8|C|822
8OIN|1|B8|C|823
*
8OIN|1|B8|G|975
8OIN|1|B8|A|976
8OIN|1|B8|G|977
8OIN|1|B8|G|978
8OIN|1|B8|G|979
8OIN|1|B8|U|980
8OIN|1|B8|U|981
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AD
- Aurora kinase A interacting protein 1
- Chain BS
- Mitochondrial ribosomal protein L14
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