IL_8OIR_015
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGCCAG*CGGUCACAC
- Length
- 16 nucleotides
- Bulged bases
- 8OIR|1|AA|C|257, 8OIR|1|AA|C|259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIR_015 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1648
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8OIR|1|AA|G|240
8OIR|1|AA|U|241
8OIR|1|AA|G|242
8OIR|1|AA|C|243
8OIR|1|AA|C|244
8OIR|1|AA|A|245
8OIR|1|AA|G|246
*
8OIR|1|AA|C|253
8OIR|1|AA|G|254
8OIR|1|AA|G|255
8OIR|1|AA|U|256
8OIR|1|AA|C|257
8OIR|1|AA|A|258
8OIR|1|AA|C|259
8OIR|1|AA|A|260
8OIR|1|AA|C|261
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AI
- mRNA
- Chain AJ
- 28S ribosomal protein S12, mitochondrial
- Chain AZ
- 28S ribosomal protein S33, mitochondrial
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain Ad
- 28S ribosomal protein S5, mitochondrial
Coloring options: