IL_8OIR_028

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUAUC*GCCCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_028 not in the Motif Atlas

Geometric match to IL_8C3A_449

Geometric discrepancy: 0.1989

The information below is about IL_8C3A_449

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.10

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

16

Unit IDs

8OIR|1|AA|A|539
8OIR|1|AA|U|540
8OIR|1|AA|A|541
8OIR|1|AA|U|542
8OIR|1|AA|C|543
*
8OIR|1|AA|G|817
8OIR|1|AA|C|818
8OIR|1|AA|C|819
8OIR|1|AA|C|820
8OIR|1|AA|U|821

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AF

28S ribosomal protein S7, mitochondrial

Chain Ac

Coiled-coil-helix-coiled-coil-helix domain-containing protein 1

Chain Ag

28S ribosomal protein S9, mitochondrial