IL_8OIR_067

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAG*CACC

Length

8 nucleotides

Bulged bases

8OIR|1|B8|A|502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_067 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.1876

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

8OIR|1|B8|G|500
8OIR|1|B8|U|501
8OIR|1|B8|A|502
8OIR|1|B8|G|503
*
8OIR|1|B8|C|517
8OIR|1|B8|A|518
8OIR|1|B8|C|519
8OIR|1|B8|C|520

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BQ

39S ribosomal protein L11, mitochondrial

Chain BU

39S ribosomal protein L16, mitochondrial

Chain Bc

39S ribosomal protein L54, mitochondrial