IL_8OIR_072

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAAAA*UUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_072 not in the Motif Atlas

Geometric match to IL_5TBW_074

Geometric discrepancy: 0.2769

The information below is about IL_5TBW_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8OIR|1|B8|U|785
8OIR|1|B8|U|786
8OIR|1|B8|A|787
8OIR|1|B8|A|788
8OIR|1|B8|A|789
8OIR|1|B8|A|790
8OIR|1|B8|A|791
*
8OIR|1|B8|U|996
8OIR|1|B8|U|997
8OIR|1|B8|A|998
8OIR|1|B8|A|999

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BM

39S ribosomal protein L3, mitochondrial

Chain BV

39S ribosomal protein L17, mitochondrial