IL_8OIS_028
3D structure
- PDB id
- 8OIS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUAUC*GCCCU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIS_028 not in the Motif Atlas
- Geometric match to IL_8C3A_449
- Geometric discrepancy: 0.1972
- The information below is about IL_8C3A_449
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.10
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 16
Unit IDs
8OIS|1|AA|A|539
8OIS|1|AA|U|540
8OIS|1|AA|A|541
8OIS|1|AA|U|542
8OIS|1|AA|C|543
*
8OIS|1|AA|G|817
8OIS|1|AA|C|818
8OIS|1|AA|C|819
8OIS|1|AA|C|820
8OIS|1|AA|U|821
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AF
- 28S ribosomal protein S7, mitochondrial
- Chain Ac
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
- Chain Ag
- 28S ribosomal protein S9, mitochondrial
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