IL_8OJ5_160

3D structure

PDB id

8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

8OJ5|1|5|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ5_160 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.1653

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8OJ5|1|5|G|5000
8OJ5|1|5|U|5001
8OJ5|1|5|U|5002
*
8OJ5|1|5|G|5045
8OJ5|1|5|U|5046
8OJ5|1|5|C|5047
8OJ5|1|5|A|5048
8OJ5|1|5|G|5049
8OJ5|1|5|C|5050

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain Ld

60S ribosomal protein L31