IL_8OJ5_168
3D structure
- PDB id
- 8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OJ5_168 not in the Motif Atlas
- Homologous match to IL_8C3A_148
- Geometric discrepancy: 0.2982
- The information below is about IL_8C3A_148
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.9
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8OJ5|1|7|G|71
8OJ5|1|7|U|72
8OJ5|1|7|U|73
8OJ5|1|7|A|74
8OJ5|1|7|G|75
8OJ5|1|7|U|76
8OJ5|1|7|A|77
8OJ5|1|7|C|78
*
8OJ5|1|7|G|98
8OJ5|1|7|G|99
8OJ5|1|7|A|100
8OJ5|1|7|A|101
8OJ5|1|7|U|102
8OJ5|1|7|A|103
8OJ5|1|7|C|104
Current chains
- Chain 7
- 5S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LF
- 60S ribosomal protein L7
- Chain LI
- Ribosomal protein uL16-like
- Chain LS
- 60S ribosomal protein L18a
- Chain LT
- 60S ribosomal protein L21
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