IL_8ONZ_005

3D structure

PDB id

8ONZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

UUUG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ONZ_005 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2254

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8ONZ|1|1|U|1945
8ONZ|1|1|U|1946
8ONZ|1|1|U|1947
8ONZ|1|1|G|1948
*
8ONZ|1|1|C|2023
8ONZ|1|1|U|2024
8ONZ|1|1|U|2025
8ONZ|1|1|A|2026

Current chains

Chain 1

28S rRNA

Nearby chains