IL_8OVE_017
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UAUCAG*CGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8OVE|1|AA|U|407, 8OVE|1|AA|U|445
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_017 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.1422
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8OVE|1|AA|U|405
8OVE|1|AA|A|406
8OVE|1|AA|U|407
8OVE|1|AA|C|408
8OVE|1|AA|A|409
8OVE|1|AA|G|410
*
8OVE|1|AA|C|442
8OVE|1|AA|G|443
8OVE|1|AA|U|444
8OVE|1|AA|U|445
8OVE|1|AA|G|446
8OVE|1|AA|A|447
8OVE|1|AA|C|448
8OVE|1|AA|G|449
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A5
- 40S ribosomal protein S8
- Chain AE
- 40S ribosomal proteins S11, putative
- Chain AS
- 40S ribosomal protein S23, putative
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