IL_8OVE_029

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8OVE|1|AA|A|681, 8OVE|1|AA|U|683, 8OVE|1|AA|U|684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_029 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.2293

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8OVE|1|AA|G|664
8OVE|1|AA|U|665
8OVE|1|AA|G|666
8OVE|1|AA|C|667
8OVE|1|AA|C|668
8OVE|1|AA|A|669
8OVE|1|AA|G|670
*
8OVE|1|AA|C|677
8OVE|1|AA|G|678
8OVE|1|AA|G|679
8OVE|1|AA|U|680
8OVE|1|AA|A|681
8OVE|1|AA|A|682
8OVE|1|AA|U|683
8OVE|1|AA|U|684
8OVE|1|AA|C|685

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain AS

40S ribosomal protein S23, putative

Chain AX

40S ribosomal protein S3, putative

Chain AY

40S ribosomal protein S30