IL_8OVE_044
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 8OVE|1|AA|G|1153
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_044 not in the Motif Atlas
- Homologous match to IL_8C3A_438
- Geometric discrepancy: 0.125
- The information below is about IL_8C3A_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 51
Unit IDs
8OVE|1|AA|C|1151
8OVE|1|AA|G|1152
8OVE|1|AA|G|1153
8OVE|1|AA|G|1154
8OVE|1|AA|G|1155
*
8OVE|1|AA|C|1227
8OVE|1|AA|A|1228
8OVE|1|AA|A|1229
8OVE|1|AA|G|1230
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A0
- 40S ribosomal protein S3a
- Chain AG
- 40S ribosomal protein S13, putative
- Chain AV
- 40S ribosomal protein S26
- Chain Bg
- 60S ribosomal protein L30
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