IL_8OVE_058

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8OVE|1|AA|C|1563, 8OVE|1|AA|C|1564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_058 not in the Motif Atlas

Homologous match to IL_8C3A_449

Geometric discrepancy: 0.0888

The information below is about IL_8C3A_449

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.10

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

16

Unit IDs

8OVE|1|AA|A|1562
8OVE|1|AA|C|1563
8OVE|1|AA|C|1564
8OVE|1|AA|A|1565
*
8OVE|1|AA|U|2112
8OVE|1|AA|C|2113
8OVE|1|AA|C|2114
8OVE|1|AA|C|2115
8OVE|1|AA|U|2116

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain AK

40S ribosomal protein S16, putative

Chain AZ

40S ribosomal protein S33, putative