IL_8OVE_191

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8OVE|1|BB|A|506, 8OVE|1|BB|A|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_191 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.0803

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8OVE|1|BB|U|464
8OVE|1|BB|G|465
*
8OVE|1|BB|U|505
8OVE|1|BB|A|506
8OVE|1|BB|A|507
8OVE|1|BB|A|508

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain Be

60S ribosomal protein L2, putative