IL_8OVE_213

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUGG*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_213 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2403

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

8OVE|1|BB|G|995
8OVE|1|BB|U|996
8OVE|1|BB|G|997
8OVE|1|BB|G|998
*
8OVE|1|BB|U|1013
8OVE|1|BB|U|1014
8OVE|1|BB|C|1015
8OVE|1|BB|U|1016

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain Ba

60S ribosomal protein L27

Chain Bx

60S ribosomal protein L7a