IL_8OVE_236
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAUGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_236 not in the Motif Atlas
- Homologous match to IL_8C3A_144
- Geometric discrepancy: 0.1551
- The information below is about IL_8C3A_144
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_45841.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OVE|1|BD|G|21
8OVE|1|BD|A|22
8OVE|1|BD|A|23
8OVE|1|BD|U|24
8OVE|1|BD|G|25
8OVE|1|BD|C|26
8OVE|1|BD|A|27
*
8OVE|1|BD|U|52
8OVE|1|BD|U|53
8OVE|1|BD|A|54
8OVE|1|BD|A|55
8OVE|1|BD|G|56
8OVE|1|BD|C|57
Current chains
- Chain BD
- 5S rRNA
Nearby chains
- Chain BL
- 60S ribosomal protein L11, putative
- Chain Bu
- 60S ribosomal protein L5, putative
Coloring options: