IL_8OVE_239
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUUAGUAC*GGAACCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_239 not in the Motif Atlas
- Homologous match to IL_8C3A_148
- Geometric discrepancy: 0.2409
- The information below is about IL_8C3A_148
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.9
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8OVE|1|BD|G|71
8OVE|1|BD|U|72
8OVE|1|BD|U|73
8OVE|1|BD|A|74
8OVE|1|BD|G|75
8OVE|1|BD|U|76
8OVE|1|BD|A|77
8OVE|1|BD|C|78
*
8OVE|1|BD|G|98
8OVE|1|BD|G|99
8OVE|1|BD|A|100
8OVE|1|BD|A|101
8OVE|1|BD|C|102
8OVE|1|BD|C|103
8OVE|1|BD|C|104
Current chains
- Chain BD
- 5S rRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BK
- 60S ribosomal protein L10, putative
- Chain BS
- 60S ribosomal protein L18a
- Chain BU
- 60S ribosomal protein L21E, putative
- Chain Bu
- 60S ribosomal protein L5, putative
- Chain Bw
- 60S ribosomal protein L7, putative
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