IL_8OVE_254
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGUAGUAC*GGAACUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_254 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.1303
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8OVE|1|BG|G|46
8OVE|1|BG|G|47
8OVE|1|BG|U|48
8OVE|1|BG|A|49
8OVE|1|BG|G|50
8OVE|1|BG|U|51
8OVE|1|BG|A|52
8OVE|1|BG|C|53
*
8OVE|1|BG|G|58
8OVE|1|BG|G|59
8OVE|1|BG|A|60
8OVE|1|BG|A|61
8OVE|1|BG|C|62
8OVE|1|BG|U|63
8OVE|1|BG|C|64
Current chains
- Chain BG
- SrRNA 2
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain Bf
- Ribosomal protein L3, mitochondrial, putative
- Chain By
- 60S ribosomal protein L9, putative
Coloring options: