IL_8OVE_259
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GG*UUGGAAUC
- Length
- 10 nucleotides
- Bulged bases
- 8OVE|1|BH|G|113, 8OVE|1|BH|U|119
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_259 not in the Motif Atlas
- Geometric match to IL_6CF2_002
- Geometric discrepancy: 0.1175
- The information below is about IL_6CF2_002
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_77710.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 27
Unit IDs
8OVE|1|BH|G|33
8OVE|1|BH|G|34
*
8OVE|1|BH|U|111
8OVE|1|BH|U|112
8OVE|1|BH|G|113
8OVE|1|BH|G|114
8OVE|1|BH|A|115
8OVE|1|BH|A|116
8OVE|1|BH|U|119
8OVE|1|BH|C|120
Current chains
- Chain BH
- SrRNA 4
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain Bf
- Ribosomal protein L3, mitochondrial, putative
- Chain Bh
- 60S ribosomal subunit protein L31, putative
Coloring options: