IL_8OVE_270
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGCAUGG*UC(OMU)GUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8OVE|1|AA|C|1679, 8OVE|1|AA|OMU|1899, 8OVE|1|AA|G|1902
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_270 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1827
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.2
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8OVE|1|AA|U|1677
8OVE|1|AA|G|1678
8OVE|1|AA|C|1679
8OVE|1|AA|A|1680
8OVE|1|AA|U|1681
8OVE|1|AA|G|1682
8OVE|1|AA|G|1683
*
8OVE|1|AA|U|1897
8OVE|1|AA|C|1898
8OVE|1|AA|OMU|1899
8OVE|1|AA|G|1900
8OVE|1|AA|U|1901
8OVE|1|AA|G|1902
8OVE|1|AA|A|1903
8OVE|1|AA|U|1904
8OVE|1|AA|G|1905
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A8
- Putative ribosomal protein S29
- Chain AD
- 40S ribosomal protein S10, putative
- Chain AQ
- Ribosomal protein S10
- Chain AX
- 40S ribosomal protein S3, putative
- Chain AY
- 40S ribosomal protein S30
Coloring options: