IL_8OVE_283

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGCGU(A2M)(OMG)*CGAA(A2M)C

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_283 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0991

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8OVE|1|BA|G|1615
8OVE|1|BA|G|1616
8OVE|1|BA|C|1617
8OVE|1|BA|G|1618
8OVE|1|BA|U|1619
8OVE|1|BA|A2M|1620
8OVE|1|BA|OMG|1621
*
8OVE|1|BB|C|618
8OVE|1|BB|G|619
8OVE|1|BB|A|620
8OVE|1|BB|A|621
8OVE|1|BB|A2M|622
8OVE|1|BB|C|623

Current chains

Chain BA

LUS_alpha rRNA

Chain BB

LSUb rRNA

Nearby chains

Chain BR

60S ribosomal protein L17, putative

Chain Br

60S ribosomal protein L4