IL_8OZ0_019
3D structure
- PDB id
- 8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translation initiation complex with eIF4F and eIF4A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 8OZ0|1|W|U|361, 8OZ0|1|W|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OZ0_019 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.106
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8OZ0|1|W|U|359
8OZ0|1|W|A|360
8OZ0|1|W|U|361
8OZ0|1|W|C|362
8OZ0|1|W|A|363
8OZ0|1|W|A|364
*
8OZ0|1|W|U|396
8OZ0|1|W|G|397
8OZ0|1|W|A|398
8OZ0|1|W|C|399
8OZ0|1|W|C|400
8OZ0|1|W|A|401
8OZ0|1|W|C|402
8OZ0|1|W|G|403
Current chains
- Chain W
- 18S rRNA
Nearby chains
- Chain X
- 40S ribosomal protein S11
- Chain a
- 40S ribosomal protein S23
- Chain d
- 40S ribosomal protein S8
Coloring options: