IL_8OZ0_033
3D structure
- PDB id
- 8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translation initiation complex with eIF4F and eIF4A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8OZ0|1|W|A|628, 8OZ0|1|W|U|630, 8OZ0|1|W|U|631
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OZ0_033 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.2487
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8OZ0|1|W|G|611
8OZ0|1|W|PSU|612
8OZ0|1|W|G|613
8OZ0|1|W|C|614
8OZ0|1|W|C|615
8OZ0|1|W|A|616
8OZ0|1|W|G|617
*
8OZ0|1|W|C|624
8OZ0|1|W|G|625
8OZ0|1|W|G|626
8OZ0|1|W|U|627
8OZ0|1|W|A|628
8OZ0|1|W|A|629
8OZ0|1|W|U|630
8OZ0|1|W|U|631
8OZ0|1|W|C|632
Current chains
- Chain W
- 18S rRNA
Nearby chains
- Chain G
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain a
- 40S ribosomal protein S23
- Chain b
- 40S ribosomal protein S30
- Chain h
- 40S ribosomal protein S3
- Chain z
- mRNA
Coloring options: