IL_8OZ0_058
3D structure
- PDB id
- 8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translation initiation complex with eIF4F and eIF4A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OZ0_058 not in the Motif Atlas
- Homologous match to IL_8C3A_446
- Geometric discrepancy: 0.0964
- The information below is about IL_8C3A_446
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8OZ0|1|W|G|1168
8OZ0|1|W|G|1169
8OZ0|1|W|A|1170
8OZ0|1|W|G|1171
8OZ0|1|W|U|1172
8OZ0|1|W|A|1173
8OZ0|1|W|U|1174
8OZ0|1|W|G|1175
*
8OZ0|1|W|U|1186
8OZ0|1|W|G|1187
8OZ0|1|W|A|1188
8OZ0|1|W|A|1189
8OZ0|1|W|A|1190
8OZ0|1|W|C|1191
Current chains
- Chain W
- 18S rRNA
Nearby chains
- Chain 9
- 60S ribosomal protein L41
- Chain a
- 40S ribosomal protein S23
Coloring options: