IL_8OZ0_098
3D structure
- PDB id
- 8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translation initiation complex with eIF4F and eIF4A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8OZ0|1|W|C|1331, 8OZ0|1|W|U|1494, 8OZ0|1|W|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OZ0_098 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1298
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OZ0|1|W|U|1329
8OZ0|1|W|G|1330
8OZ0|1|W|C|1331
8OZ0|1|W|A|1332
8OZ0|1|W|U|1333
8OZ0|1|W|G|1334
8OZ0|1|W|G|1335
*
8OZ0|1|W|U|1492
8OZ0|1|W|C|1493
8OZ0|1|W|U|1494
8OZ0|1|W|G|1495
8OZ0|1|W|U|1496
8OZ0|1|W|G|1497
8OZ0|1|W|A|1498
8OZ0|1|W|U|1499
8OZ0|1|W|G|1500
Current chains
- Chain W
- 18S rRNA
Nearby chains
- Chain G
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain h
- 40S ribosomal protein S3
- Chain i
- 40S ribosomal protein S10
- Chain o
- 40S ribosomal protein S29
- Chain w
- 40S ribosomal protein S20
- Chain z
- mRNA
Coloring options: