IL_8P4V_189
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_189 not in the Motif Atlas
- Homologous match to IL_8P9A_421
- Geometric discrepancy: 0.1261
- The information below is about IL_8P9A_421
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8P4V|1|A|G|885
8P4V|1|A|U|886
8P4V|1|A|A|887
8P4V|1|A|U|888
*
8P4V|1|A|A|924
8P4V|1|A|G|925
8P4V|1|A|A|926
8P4V|1|A|C|927
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AQ
- 60S ribosomal protein L43-A
- Chain C
- 40S ribosomal protein S1-A
- Chain P
- 40S ribosomal protein S14-B
- Chain b
- Small ribosomal subunit protein eS26B
- Chain j
- 60S ribosomal protein L2-A
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