IL_8P4V_238
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- AU*AGUUGU
- Length
- 8 nucleotides
- Bulged bases
- 8P4V|1|AR|U|147
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_238 not in the Motif Atlas
- Homologous match to IL_8P9A_236
- Geometric discrepancy: 0.0751
- The information below is about IL_8P9A_236
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10396.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8P4V|1|AR|A|123
8P4V|1|AR|U|124
*
8P4V|1|AR|A|144
8P4V|1|AR|G|145
8P4V|1|AR|U|146
8P4V|1|AR|U|147
8P4V|1|AR|G|148
8P4V|1|AR|U|149
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain AT
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CJ
- 60S ribosomal protein L8-A
- Chain CP
- 60S ribosomal protein L15-A
- Chain DJ
- 60S ribosomal protein L35-A
Coloring options: