IL_8P4V_284

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8P4V|1|AR|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_284 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.1084

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.2

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8P4V|1|AR|G|1234
8P4V|1|AR|U|1235
8P4V|1|AR|G|1236
8P4V|1|AR|G|1237
8P4V|1|AR|C|1238
*
8P4V|1|AR|G|1250
8P4V|1|AR|A|1251
8P4V|1|AR|A|1252
8P4V|1|AR|U|1253
8P4V|1|AR|C|1254

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain p0

60S acidic protein P0