3D structure

PDB id
8P4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with HaterumaimideQ
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
AUUAU*AGAAU
Length
10 nucleotides
Bulged bases
8P4V|1|AR|A|3130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P4V_348 not in the Motif Atlas
Homologous match to IL_8P9A_348
Geometric discrepancy: 0.0549
The information below is about IL_8P9A_348
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

8P4V|1|AR|A|3103
8P4V|1|AR|U|3104
8P4V|1|AR|U|3105
8P4V|1|AR|A|3106
8P4V|1|AR|U|3107
*
8P4V|1|AR|A|3127
8P4V|1|AR|G|3128
8P4V|1|AR|A|3129
8P4V|1|AR|A|3130
8P4V|1|AR|U|3131

Current chains

Chain AR
25S ribosomal RNA

Nearby chains

Chain CK
60S ribosomal protein L9-A
Chain CQ
60S ribosomal protein L16-A
Chain DO
Ubiquitin-60S ribosomal protein L40

Coloring options:


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